Stem-loop gga-mir-6641

Accession

MI0022460

Description

Gallus gallus gga-mir-6641 precursor miRNA

Sequence

aaaaaugauuuccuuacagACAGCUUUUUUAUUUCCAGUUAauguguuuuaaauacCUGCUGGGAGAAAAAAGCUAUgugcaaggugacagaaaacaagaggca
.....((.((.((((.((.(.(((((((((.((((((((....(((((...)))))..))))))))))))))))).).)).)))).))))..............

Structure

---------aaaaa  a  u    a  g C         A        UAau     u 
              ug uu ccuu ca A AGCUUUUUU UUUCCAGU    guguu  
              || || |||| || | ||||||||| ||||||||    ||||| u
              ac ag ggaa gu U UCGAAAAAA GAGGGUCG    cauaa  
acggagaacaaaag  -  u    c  g A         -        --UC     a 

Annotation confidence Not enough data

Genome context

chr1: 179212021-179212124 [+]

Mature gga-miR-6641-5p

• Accession: MIMAT0025737
• Description: Gallus gallus gga-miR-6641-5p mature miRNA
• Sequence: 20 - ACAGCUUUUUUAUUUCCAGUUA - 41
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6641-3p

• Accession: MIMAT0025738
• Description: Gallus gallus gga-miR-6641-3p mature miRNA
• Sequence: 57 - CUGCUGGGAGAAAAAAGCUAU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227