Stem-loop gga-mir-6643

Accession

MI0022462

Description

Gallus gallus gga-mir-6643 precursor miRNA

Sequence

517 reads, 1.0 reads per million, 146 experiments

aggaaccuggucccaggaaccccagcccCAGGGCUGGCAGGGGAGGGUauacgcaggcagCCACCCCUGCCAGCCUUGGGAcggugguuucccagaagccccagagcaag
.((...((((.....((((((((.(.(((((((((((((((((..(((...........))).))))))))))))))))).))).))))))))))...))..........

Structure

---------a  aac    uccca      -  a c                 AG   auac 
          gg   cugg     ggaacc cc g ccCAGGGCUGGCAGGGG  GGU    g
          ||   ||||     |||||| || | |||||||||||||||||  |||    c
          cc   gacc     cuuugg gg c GGGUUCCGACCGUCCCC  CCg    a
gaacgagacc  gaa    -----      u  - A                 -A   acgg 

Annotation confidence High

Genome context

14: 13156430-13156539 [-]

Mature gga-miR-6643-5p

• Accession: MIMAT0025741
• Description: Gallus gallus gga-miR-6643-5p mature miRNA
• Sequence: 29 - CAGGGCUGGCAGGGGAGGGU - 48
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6643-3p

• Accession: MIMAT0051296
• Description: Gallus gallus gga-miR-6643-3p mature miRNA
• Sequence: 61 - CCACCCCUGCCAGCCUUGGGA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227