Stem-loop gga-mir-6645

Accession

MI0022463

Description

Gallus gallus gga-mir-6645 precursor miRNA

Sequence

827 reads, 2.0 reads per million, 137 experiments

ugagcccuaguguccccaguuUGGGAGGUAGCAGUGGUGGUGAcaguggugguggugacacccccaacacucACCCCCACUGCUCUCUCCCAGggaugaggaaauucaga
((((.(((...(((((.....(((((((.((((((((.(((((...(((.((((....)))).)))....))))).)))))))).)))))))))))).)))...))))..

Structure

--    --c   agu     caguu       U        U     -cag   u    g 
  ugag   ccu   guccc     UGGGAGG AGCAGUGG GGUGA    ugg ggug u
  ||||   |||   |||||     ||||||| |||||||| |||||    ||| ||||  
  acuu   gga   uaggG     ACCCUCU UCGUCACC CCAcu    acc ccac g
ag    aaa   --g     -----       C        C     caca   c    a 

Annotation confidence High

Genome context

chr5: 39173710-39173819 [+]

Mature gga-miR-6645-5p

• Accession: MIMAT0025742
• Description: Gallus gallus gga-miR-6645-5p mature miRNA
• Sequence: 22 - UGGGAGGUAGCAGUGGUGGUGA - 43
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6645-3p

• Accession: MIMAT0051297
• Description: Gallus gallus gga-miR-6645-3p mature miRNA
• Sequence: 73 - ACCCCCACUGCUCUCUCCCAG - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227