Stem-loop gga-mir-6648-1

Accession

MI0022467

Description

Gallus gallus gga-mir-6648-1 precursor miRNA

Sequence

188 reads, 4 reads per million, 5 experiments

gcggaggcuacggggguaaAGGAGCGUUCAGAAUGCCGGUGgcagcugcccUCCGGCAUUCUGAACGCUCCUuuacgcagggugauuggggcuggugag
((...((.(((..(.((((((((((((((((((((((((.(((....)))..)))))))))))))))))))))))).)...))).))...)).......

Structure

-------  gga  c   -gg g                        -U   a 
       gc   gg uac   g guaaAGGAGCGUUCAGAAUGCCGG  Ggc g
       ||   || |||   | ||||||||||||||||||||||||  |||  
       cg   uu gug   c cauuUCCUCGCAAGUCUUACGGCC  ccg c
gaguggu  ggg  a   gga g                        Uc   u 

Annotation confidence Not enough data

Genome context

chr15: 6705939-6706037 [+]

Mature gga-miR-6648-5p

• Accession: MIMAT0025746
• Description: Gallus gallus gga-miR-6648-5p mature miRNA
• Sequence: 20 - AGGAGCGUUCAGAAUGCCGGUG - 41
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6648-3p

• Accession: MIMAT0025747
• Description: Gallus gallus gga-miR-6648-3p mature miRNA
• Sequence: 52 - UCCGGCAUUCUGAACGCUCCU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227