Stem-loop gga-mir-6650

Accession

MI0022469

Description

Gallus gallus gga-mir-6650 precursor miRNA

Sequence

128 reads, 2.0 reads per million, 36 experiments

ugguuuguaggcugcaucugacaaCAGCCAGCAGAAGAGCAACUGGGCaggugcugcugccugCCAGUUGGCCUGCUGGCUGCUguaagacugcagggauccugaugccc
.(((...((((((((((((.(((.((((((((((.....(((((((.(((((......))))))))))))..)))))))))).))).))).)))))....))))..))).

Structure

u   uug    ----     -   g   a          AAGAG       G     gc 
 ggu   uagg    cugca ucu aca CAGCCAGCAG     CAACUGG Caggu  u
 |||   ||||    ||||| ||| ||| ||||||||||     ||||||| |||||   
 ccg   gucc    gacgu aga ugU GUCGGUCGUC     GUUGACC guccg  g
c   -ua    uagg     c   a   C          ---CG       -     uc 

Annotation confidence Medium

Genome context

15: 7690875-7690984 [-]

Mature gga-miR-6650-5p

• Accession: MIMAT0025750
• Description: Gallus gallus gga-miR-6650-5p mature miRNA
• Sequence: 25 - CAGCCAGCAGAAGAGCAACUGGGC - 48
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6650-3p

• Accession: MIMAT0051298
• Description: Gallus gallus gga-miR-6650-3p mature miRNA
• Sequence: 64 - CCAGUUGGCCUGCUGGCUGCU - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227