miRBase entry: gga-mir-1684b

Stem-loop gga-mir-1684b

Accession

MI0022501

Description

Gallus gallus gga-mir-1684b precursor miRNA

Literature search

1 open access papers mention gga-mir-1684b
(1 sentences)

Sequence

16815 reads, 13.0 reads per million, 185 experiments

gcugccaaauggaucggguuugaaaggagAGCUCUGCUUCCUCAUACAUACUcaucuuuucuauggauAAGUAUGAGGAAAUGGAGAUCUccuuccauuccaccuguuuu
......((((((....((..((.(((((((.(((((.((((((((((.((.((((.......)))).)).)))))))))).))))).))))))).))..))..)))))).

Structure

gcugcc      aucg  uu  a       G     C          A  C    cu 
      aaaugg    gg  ug aaggagA CUCUG UUCCUCAUAC UA Ucau  u
      ||||||    ||  || ||||||| ||||| |||||||||| || ||||  u
      uuuguc    cc  ac uuccUCU GAGGU AAGGAGUAUG Au ggua  u
-----u      --ca  uu  c       A     A          A  a    uc

Annotation confidence High

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Genome context

4: 88672199-88672308 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-1684b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gga-miR-1684b-5p

Accession	MIMAT0051300
Description	Gallus gallus gga-miR-1684b-5p mature miRNA
Sequence	30 - AGCUCUGCUUCCUCAUACAUACU - 52
Evidence	experimental Illumina [1]

Mature gga-miR-1684b-3p

Accession	MIMAT0025785
Description	Gallus gallus gga-miR-1684b-3p mature miRNA
Sequence	69 - AAGUAUGAGGAAAUGGAGAUCU - 90
Evidence	experimental Illumina [1]
Database links
Predicted targets

References

PubMed ID: 22418847
Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
"Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
"RNA Biol (2012) 9:212-227