miRBase entry: gga-mir-6681

Stem-loop gga-mir-6681


Accession
MI0022502
Description
Gallus gallus gga-mir-6681 precursor miRNA


Sequence

262 reads, 1.0 reads per million, 100 experiments
acaacucagagagacggucuggugcUUCUGGAUCGAGAAAUUCAGCaugugcuggaaggauaaUGCUGAAUGACUCUGAUCCUUUgcugcccucuucuggcucuccuuuu
........(((((.(((...(((((....((((((((..(((((((((...((....))...)))))))))..))).)))))...)).))).....))).))))).....

Structure
acaacuca     a   --ucu   -  UUCU     -   AA         gug  g 
        gagag cgg     ggu gc    GGAUC GAG  AUUCAGCau   cu g
        ||||| |||     ||| ||    ||||| |||  |||||||||   ||  
        cucuc guc     ccg cg    CCUAG CUC  UAAGUCGUa   gg a
---uuuuc     g   uucuc   u  -UUU     U   AG         aua  a 


Annotation confidence Low
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Genome context
20: 8757852-8757961 [-]

Database links

Mature gga-miR-6681-5p

Accession MIMAT0025786
Description Gallus gallus gga-miR-6681-5p mature miRNA
Sequence 26 - UUCUGGAUCGAGAAAUUCAGC - 46
Evidence experimental
Illumina [1]

Mature gga-miR-6681-3p

Accession MIMAT0051301
Description Gallus gallus gga-miR-6681-3p mature miRNA
Sequence 64 - UGCUGAAUGACUCUGAUCCUUU - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227