Stem-loop gga-mir-6682

Accession

MI0022503

Description

Gallus gallus gga-mir-6682 precursor miRNA

Sequence

56 reads, 2 reads per million, 2 experiments

acacaccugugcuuuagugguggcuugccaccuaggaugagccauauguuuauauaaauguuaUGGAACAAAGUAGGUGGCGUGCcacagcagagagcuaggcgugucau
((((.((((.(((((.((.(((((.(((((((((...((..((((((((((....))))).)))))..))...))))))))).))))).))..))))))))).))))...

Structure

---    a    u     -a  g     u         gga  ag     -     a 
   acac ccug gcuuu  gu guggc ugccaccua   ug  ccaua uguuu u
   |||| |||| |||||  || ||||| |||||||||   ||  ||||| |||||  
   ugug ggau cgaga  cg cacCG GCGGUGGAU   AC  GGUau guaaa a
uac    c    -     ga  a     U         GAA  AA     u     u 

Annotation confidence Not enough data

Genome context

chr4: 21597361-21597470 [+]

Mature gga-miR-6682-3p

• Accession: MIMAT0025787
• Description: Gallus gallus gga-miR-6682-3p mature miRNA
• Sequence: 64 - UGGAACAAAGUAGGUGGCGUGC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227