Stem-loop gga-mir-6683

Accession

MI0022504

Description

Gallus gallus gga-mir-6683 precursor miRNA

Sequence

3 reads, 1 reads per million, 2 experiments

acagucuuugucucaaagggaaacggcguuggucucccagucuguuggugauucugcuacuucaUCAGAGCCUGGGAGUAAACGUgguccugugacaagugcagcagaac
...((.((((((....(((...((.(((((...(((((((.((.(((((((..........))))))))).)))))))..))))).)))))..)))))).))........

Structure

-----aca  c      ucaa   gaa  g     ggu       u  g       uucu 
        gu uuuguc    agg   ac gcguu   cucccag cu uugguga    g
        || ||||||    |||   || |||||   ||||||| || |||||||     
        cg gaacag    ucc   ug UGCAA   GAGGGUC GA GACUacu    c
caagacga  u      --ug   ---  g     -AU       C  -       ucau 

Annotation confidence Not enough data

Genome context

chr5: 30173954-30174063 [+]

Mature gga-miR-6683-3p

• Accession: MIMAT0025788
• Description: Gallus gallus gga-miR-6683-3p mature miRNA
• Sequence: 65 - UCAGAGCCUGGGAGUAAACGU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227