Stem-loop gga-mir-6685

Accession

MI0022506

Description

Gallus gallus gga-mir-6685 precursor miRNA

Sequence

12 reads, 1 reads per million, 4 experiments

caucagcgcuguacccgagcCAGCAAUGCACGUGUACUCAGagacggaauuccUGGUGACGCGGGCAUUGCUGCuugguucaggucauugcacacacaca
.....(((.((.(((.(((((((((((((.(((((((.(((.((......))))))).))))).)))))))....)))))).))))).))).........

Structure

----cauca   c  u   c      ----       A     -  U   a  cg 
         gcg ug acc gagcCA    GCAAUGC CGUGU AC CAG ga  g
         ||| || ||| ||||||    ||||||| ||||| || ||| ||   
         cgu ac ugg cuuggu    CGUUACG GCGCA UG GUc cu  a
acacacaca   u  -   a      uCGU       G     G  -   -  ua 

Annotation confidence Not enough data

Genome context

chr5: 25026259-25026358 [+]

Mature gga-miR-6685-5p

• Accession: MIMAT0025790
• Description: Gallus gallus gga-miR-6685-5p mature miRNA
• Sequence: 21 - CAGCAAUGCACGUGUACUCAG - 41
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6685-3p

• Accession: MIMAT0025791
• Description: Gallus gallus gga-miR-6685-3p mature miRNA
• Sequence: 54 - UGGUGACGCGGGCAUUGCUGC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227