Stem-loop gga-mir-6689

Accession

MI0022510

Description

Gallus gallus gga-mir-6689 precursor miRNA

Sequence

201 reads, 10.0 reads per million, 51 experiments

guucuccugagccugacugcuuacagugAGGUUCUGUCAGAGCCAUUCUGGgugguuucaugcuucuggUGAUGGCGCUCGCAGAACUGCAcugacugcuuugcuucccu
((((....))))......((...(((((.((((((((.((.((((((.(.((.(((.....))).)).).)))))).)).)))))))).)))))...))...........

Structure

guucuccugagccugacu  uua     A        C  A      C G  u   u 
                  gc   cagug GGUUCUGU AG GCCAUU U Gg ggu u
                  ||   ||||| |||||||| || |||||| | || ||| c
                  cg   gucAC UCAAGACG UC CGGUAG g uc ucg a
-------ucccuucguuu  uca     G        C  G      U g  u   u 

Annotation confidence High

Genome context

4: 3177965-3178074 [-]

Mature gga-miR-6689-5p

• Accession: MIMAT0051302
• Description: Gallus gallus gga-miR-6689-5p mature miRNA
• Sequence: 29 - AGGUUCUGUCAGAGCCAUUCUGG - 51
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6689-3p

• Accession: MIMAT0025795
• Description: Gallus gallus gga-miR-6689-3p mature miRNA
• Sequence: 70 - UGAUGGCGCUCGCAGAACUGCA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227