miRBase entry: gga-mir-6690

Stem-loop gga-mir-6690


Accession
MI0022511
Description
Gallus gallus gga-mir-6690 precursor miRNA


Sequence

2 reads, 0 reads per million, 1 experiments
ugucccaaacugguucaguugcucccUCAGAAGGGGAUGGCUUUGGCUCcgagcaggucggagaucauacagcugccucuuucugcaggugcaauggugguuauccuucu
((..(((...)))..))(((((..((((((((((((.(((((.(((((((((.....)))))).)))...))))).))))))))).))).)))))((.((....)).)).

Structure
ugucccaaacugguuca     uc   -         A     --U   -      g 
                 guugc  ccU CAGAAGGGG UGGCU   UGG CUCcga c
                 |||||  ||| ||||||||| |||||   ||| |||||| a
                 uaacg  gga gucuuucuc gucga   acu gaggcu g
--ucuuccuauuggugg     -u   c         c     cau   a      g 


Annotation confidence Not enough data
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Genome context
chr3: 107831726-107831835 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-6690
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-6690-5p

Accession MIMAT0025796
Description Gallus gallus gga-miR-6690-5p mature miRNA
Sequence 27 - UCAGAAGGGGAUGGCUUUGGCUC - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227