Stem-loop gga-mir-6702

Accession

MI0022524

Description

Gallus gallus gga-mir-6702 precursor miRNA

Sequence

715 reads, 22.0 reads per million, 60 experiments

cuaugauucuacguggccUCACCAGGGCAGAGUAGAGGuguguaguagagcucacCUCCCUCAACCUGCUGGCcacgcuccuuuuaaugccccccaggaucccauuggcc
...........(((((((....((((...(((..((((((.((......)).)))))).)))..))))..)))))))...........(((.....((...))...))).

Structure

----------------------cuaugauucua       UCAC    GCA   UA      u  ag 
                                 cguggcc    CAGG   GAG  GAGGug gu  u
                                 |||||||    ||||   |||  |||||| ||   
                                 gcacCGG    GUCC   CUC  CUCcac cg  a
ccgguuacccuaggaccccccguaauuuuccuc       --UC    -AA   -C      u  ag 

Annotation confidence Medium

Genome context

3: 107181689-107181798 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-6702

Mature gga-miR-6702-5p

• Accession: MIMAT0025812
• Description: Gallus gallus gga-miR-6702-5p mature miRNA
• Sequence: 19 - UCACCAGGGCAGAGUAGAGG - 38
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6702-3p

• Accession: MIMAT0051306
• Description: Gallus gallus gga-miR-6702-3p mature miRNA
• Sequence: 56 - CUCCCUCAACCUGCUGGC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227