Stem-loop gga-mir-6644-1

Accession

MI0022538

Description

Gallus gallus gga-mir-6644-1 precursor miRNA

Sequence

31 reads, 6.0 reads per million, 13 experiments

gcaggauucacccugagagacgucacauggcuugguuguaccaucuuagcccccuccuaaggGGGGCUAAGAUGGUACAGCGGAgagucaucuucgucugaggucccauu
.((((......))))..(((((....(((((((.(((((((((((((((((((((.....)))))))))))))))))))))...)))))))...)))))...........

Structure

gcaggauucacccugag     ucac       --g                     c 
                 agacg    auggcuu   guuguaccaucuuagcccccu c
                 |||||    |||||||   ||||||||||||||||||||| u
                 ucugc    uacugag   CGACAUGGUAGAAUCGGGGgg a
------uuacccuggag     -uuc       AGG                     a 

Annotation confidence Not enough data

Genome context

27: 395052-395159 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-6644-1

Mature gga-miR-6644-3p

• Accession: MIMAT0025745
• Description: Gallus gallus gga-miR-6644-3p mature miRNA
• Sequence: 63 - GGGGCUAAGAUGGUACAGCGGA - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227