Stem-loop gga-mir-6557

Accession

MI0022540

Description

Gallus gallus gga-mir-6557 precursor miRNA

Literature search

2 open access papers mention gga-mir-6557
(2 sentences)

Sequence

4704 reads, 4.0 reads per million, 158 experiments

cguuacgccccgcgccgugCCCGGAGGAGCCCGGCGCUGccuuucuacgcggccgccGCGCCGAUUGUCUCCUCCGGGCAcgggggaugucggcgggcccgcugcg
....(((.(((...((((((((((((((((.((((((.(((.........)))....))))))...).)))))))))))))))))).)))(((((....)))))..

Structure

------------cguu   c   gcg               - --C      ---U   uuu 
                acg ccc   ccgugCCCGGAGGAG C   CGGCGC    Gcc   c
                ||| |||   ||||||||||||||| |   ||||||    |||   u
                ugu ggg   ggcACGGGCCUCCUC G   GCCGCG    cgg   a
gcgucgcccgggcggc   a   ---               U UUA      ccgc   cgc 

Annotation confidence High

Genome context

2: 60795847-60795952 [+]

Mature gga-miR-6557-5p

• Accession: MIMAT0025828
• Description: Gallus gallus gga-miR-6557-5p mature miRNA
• Sequence: 20 - CCCGGAGGAGCCCGGCGCUG - 39
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6557-3p

• Accession: MIMAT0025829
• Description: Gallus gallus gga-miR-6557-3p mature miRNA
• Sequence: 58 - GCGCCGAUUGUCUCCUCCGGGCA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227