Stem-loop gga-mir-6563

Accession

MI0022543

Description

Gallus gallus gga-mir-6563 precursor miRNA

Sequence

83 reads, 1.0 reads per million, 43 experiments

agcuacugacugcugcaucaGUUGGUCGGUUGUGCUUAGAGAUGUuuauuuucaugucccACUGGGCACACUGUGACUGGCUacaugcagcacucaguuacuucagcucc
(((((((((.((((((((.(((((((((..(((((((((.(((((........)))))...)))))))))...)))))))))..)))))))).)))))......))))..

Structure

--    ------     c        -c         -GU         --A     uua 
  agcu      acuga ugcugcau  aGUUGGUCG   UGUGCUUAG   GAUGU   u
  ||||      ||||| ||||||||  |||||||||   |||||||||   |||||    
  ucga      ugacu acgacgua  UCGGUCAGU   ACACGGGUC   cugua   u
cc    cuucau     c        ca         GUC         Acc     cuu 

Annotation confidence Medium

Genome context

3: 16072466-16072575 [+]

Mature gga-miR-6563-5p

• Accession: MIMAT0025834
• Description: Gallus gallus gga-miR-6563-5p mature miRNA
• Sequence: 21 - GUUGGUCGGUUGUGCUUAGAGAUGU - 45
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6563-3p

• Accession: MIMAT0025835
• Description: Gallus gallus gga-miR-6563-3p mature miRNA
• Sequence: 61 - ACUGGGCACACUGUGACUGGCU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227