Stem-loop mmu-mir-6546

Accession

MI0024983

Symbol

MGI: Mir6546

Description

Mus musculus mmu-mir-6546 precursor miRNA

Literature search

1 open access papers mention mmu-mir-6546
(1 sentences)

Sequence

976 reads, 7.0 reads per million, 66 experiments

AGGCGCCUCUGAGCUUGUGCUUGUcgccaggcugcgcuAGCGAGCGAAGCCCAAGCGCCAGA
.(((((...((.((((.((((((((((......)))...))))))))))).)).)))))...

Structure

--A     CUC  A    G       ---   ca 
   GGCGC   UG GCUU UGCUUGU   cgc  g
   |||||   || |||| |||||||   |||   
   CCGCG   AC CGAA GCGAGCG   gcg  g
AGA     --A  C    -       Auc   uc 

Annotation confidence Medium

Genome context

1: 170892160-170892221 [-]

Mature mmu-miR-6546-5p

• Accession: MIMAT0029792
• Description: Mus musculus mmu-miR-6546-5p mature miRNA
• Sequence: 1 - AGGCGCCUCUGAGCUUGUGCUUGU - 24
• Evidence: experimental ; RNAseq [1]

Mature mmu-miR-6546-3p

• Accession: MIMAT0029793
• Description: Mus musculus mmu-miR-6546-3p mature miRNA
• Sequence: 39 - AGCGAGCGAAGCCCAAGCGCCAGA - 62
• Evidence: experimental ; RNAseq [1]

References

1. PubMed ID: 23325850
   Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues
   "Castellano L, Stebbing J"
   "Nucleic Acids Res (2013) 41:3339-3351