Stem-loop mmu-mir-216c

Accession

MI0025032

Symbol

MGI: Mir216c

Description

Mus musculus mmu-mir-216c precursor miRNA

Literature search

15 open access papers mention mmu-mir-216c
(38 sentences)

Sequence

12 reads, 1 reads per million, 8 experiments

GAAGAAUCUCUACAGGUAAGUGUgugguuucuucagugacaucacaUUUGCCUGCAGAGAUUUCCCAGU
...((((((((.((((((((((((..(((........)))..)))))))))))).))))))))......

Structure

---GAA        A            ug   ucu 
      GAAUCUCU CAGGUAAGUGUg  guu   u
      |||||||| ||||||||||||  |||    
      UUUAGAGA GUCCGUUUacac  cag   c
UGACCC        C            ua   uga 

Annotation confidence Not enough data

Genome context

chr11: 28746198-28746266 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-216c

Mature mmu-miR-216c-5p

• Accession: MIMAT0029888
• Description: Mus musculus mmu-miR-216c-5p mature miRNA
• Sequence: 1 - GAAGAAUCUCUACAGGUAAGUGU - 23
• Evidence: experimental ; RNAseq [1]

Mature mmu-miR-216c-3p

• Accession: MIMAT0029889
• Description: Mus musculus mmu-miR-216c-3p mature miRNA
• Sequence: 47 - UUUGCCUGCAGAGAUUUCCCAGU - 69
• Evidence: experimental ; RNAseq [1]

References

1. PubMed ID: 23325850
   Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues
   "Castellano L, Stebbing J"
   "Nucleic Acids Res (2013) 41:3339-3351