Stem-loop pmi-let-7

Accession

MI0025085

Description

Patiria miniata pmi-let-7 precursor miRNA

Literature search

3 open access papers mention pmi-let-7
(7 sentences)

Sequence

cuacaagcguucccuuugugUGAGGUAGUCGGUUGUAAAGAuaagaaauacaccugaaggcgauaucuauacaacccacuaacuuuccaaaagguuuugcaca
......(((...(((((.((.((((((((.(((((((.(((((....................))))).))))))).))).))))).)))))))...)))...

Structure

cuacaa   uuc     g  U     -   C       A     agaaauaca 
      gcg   ccuuu ug GAGGU AGU GGUUGUA AGAua         c
      |||   ||||| || ||||| ||| ||||||| |||||          
      cgu   ggaaa ac uuuca uca ccaacau ucuau         c
---aca   uuu     -  c     a   c       a     agcggaagu 

Annotation confidence Not enough data

Genome context

ref|NW_024037068.1|: 20467354-20467456 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pmi-let-7

Mature pmi-let-7-5p

• Accession: MIMAT0032139
• Description: Patiria miniata pmi-let-7-5p mature miRNA
• Sequence: 21 - UGAGGUAGUCGGUUGUAAAGA - 41
• Evidence: not_experimental

References

1. PubMed ID: 23703796
   MicroRNAs support the monophyly of enteropneust hemichordates
   "Peterson KJ, Su YH, Arnone MI, Swalla B, King BL"
   "J Exp Zool B Mol Dev Evol (2013) 320:368-374