miRBase entry: mtr-MIR2652m

Stem-loop mtr-MIR2652m


Accession
MI0025205
Description
Medicago truncatula mtr-MIR2652m precursor miRNA


Sequence

51974 reads, 506.0 reads per million, 111 experiments
gcgguuauggugcauaagaaaauccuuaugcacccugcauaaauccagaaauGGUUUUGGAGUACAACUCACAgaaaccauuuccacaguaaaaugguuuuggcauaauuggguugggauuuaugcaaggugcuggaaaucauuaaguacaucuaaugguuuugaaguacaacucacaaaaaccauuucugaauuUAUGCAGGGUGCAUAAGGAUUuccuuaugcaccauaaccg
.(((((((((((((((((.(((((((((((((((((((((((((.((((((((((((((((((.(((((((..((((((((((........))))))))))........))))))).............(((((.((((((((((........))))))))))..))))).)))).).))))))))))))).))))))))))))))))))))))))).)))))))))))))))))

Structure
g                 a                         c             - -    ------------------------------------------------------A       ------CA          cca 
 cgguuauggugcauaag aaauccuuaugcacccugcauaaau cagaaauGGUUUU G GAGU                                                       CAACUCA        gaaaccauuu   c
 ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | ||||                                                       |||||||        ||||||||||    
 gccaauaccacguauuc uUUAGGAAUACGUGGGACGUAUuua gucuuuaccaaaa c cuca                                                       guugggu        uuuugguaaa   a
-                 c                         a             a a    acaugaaguuuugguaaucuacaugaauuacuaaaggucguggaacguauuuagg       uaauacgg          aug 


Annotation confidence Low
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Genome context
chr6: 21568846-21569080 [+]

Database links

Mature mtr-miR2652m-5p

Accession MIMAT0055268
Description Medicago truncatula mtr-miR2652m-5p mature miRNA
Sequence 53 - GGUUUUGGAGUACAACUCACA - 73
Evidence experimental
unknown

Mature mtr-miR2652m-3p

Accession MIMAT0029965
Description Medicago truncatula mtr-miR2652m-3p mature miRNA
Sequence 196 - UAUGCAGGGUGCAUAAGGAUU - 216
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796