Stem-loop bdi-MIR7782

Accession

MI0025404

Description

Brachypodium distachyon bdi-MIR7782 precursor miRNA

Sequence

ucaucaaguauauuacGCGGCAUGGUAUUAGAGCAAGUUGccaaaucuggcugccaugacaauuggugauggugaugguauuguuuuggugACCUGCUCUGAUACCAUGUUGUGAaauauuuuuaaugca
.(((.(((.(((((.((((((((((((((((((((.(((((((((....((((((((.((.....)).)))))...))).....))))))))).)))))))))))))))))))).))))).))).)))..

Structure

-u   c   u     a                    A         -ucug   ---     g  a 
  cau aag auauu cGCGGCAUGGUAUUAGAGCA GUUGccaaa     gcu   gccau ac a
  ||| ||| ||||| |||||||||||||||||||| |||||||||     |||   ||||| || u
  gua uuu uauaa GUGUUGUACCAUAGUCUCGU CAgugguuu     ugg   uggua ug u
ac   a   u     A                    C         uguua   uag     g  g 

Annotation confidence Not enough data

Genome context

3: 30460954-30461083 [+]

Mature bdi-miR7782-5p

• Accession: MIMAT0030318
• Description: Brachypodium distachyon bdi-miR7782-5p mature miRNA
• Sequence: 17 - GCGGCAUGGUAUUAGAGCAAGUUG - 40
• Evidence: experimental ; Illumina [1-2]

Mature bdi-miR7782-3p

• Accession: MIMAT0030319
• Description: Brachypodium distachyon bdi-miR7782-3p mature miRNA
• Sequence: 92 - ACCUGCUCUGAUACCAUGUUGUGA - 115
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443


2. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145