Stem-loop sma-mir-8405

Accession

MI0027197

Description

Schistosoma mansoni sma-mir-8405 precursor miRNA

Sequence

cgggagaauaaauuagagagguagaaauguGAGAGCUAUCCUAUAUUGCauuacacuauauauuucuauugugUAAUUAUCAAAUAUUUAGUuacugguauuuuuacauugucauuuaauuguucacauu
..(((.(((((((..((.((((((((((((.(((((((...(((.(((.(((((((.(((......))).)))))))...))))))..))))).)).)))))))))).)).)))))).))).))).....

Structure

---cg   g   -    ua  g  -          G  -     UCC   A   --C       u   ua 
     gga aau aaau  ga ag guagaaaugu AG AGCUA   UAU UUG   auuacac aua  u
     ||| ||| ||||  || || |||||||||| || |||||   ||| |||   ||||||| |||   
     cuu uua uuua  cu uu cauuuuuaug uc uUGAU   AUA AAC   UAAUgug uau  u
uuaca   g   a    --  g  a          g  a     -UU   -   UAU       u   cu 

Annotation confidence Not enough data

Genome context

Chr_1: 45413006-45413135 [-]

Mature sma-miR-8405-5p

• Accession: MIMAT0033512
• Description: Schistosoma mansoni sma-miR-8405-5p mature miRNA
• Sequence: 31 - GAGAGCUAUCCUAUAUUGC - 49
• Evidence: experimental ; SOLiD [1]

Mature sma-miR-8405-3p

• Accession: MIMAT0033513
• Description: Schistosoma mansoni sma-miR-8405-3p mature miRNA
• Sequence: 74 - UAAUUAUCAAAUAUUUAGU - 92
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402