Stem-loop sma-mir-8406

Accession

MI0027199

Description

Schistosoma mansoni sma-mir-8406 precursor miRNA

Sequence

ucacaaguauuaugagcacuauaaauaacaguagCAAAUGCAUCUAGAUGAAUguuuuaguaaauauuuuaggaaauguuucaagguauuguaacuaaauuauugaUUUUCUUAAGAUUUAUUUUGuuguucuuaguguguaaaaguaacuauu
.....((((((....((((((..(((((((.....(((((.((((((((.((((.((((((.((((((((.((((...))))))))))))...)))))).)))).)))).....)))).))))))))))))..)))))).....))).)))...

Structure

ucaca   -   -auga      ua       guagC     C    -----    G    u      --a        a    a 
     agu auu     gcacua  aauaaca     AAAUG AUCU     AGAU AAUg uuuagu   aauauuuu ggaa  
     ||| |||     ||||||  |||||||     ||||| ||||     |||| |||| ||||||   |||||||| |||| u
     uca uga     ugugau  uuguuGU     UUUAU UAGA     UUUa uuau aaauca   uuauggaa cuuu  
--uua   a   aaaug      uc       -----     U    AUUCU    g    u      aug        -    g 

Annotation confidence Not enough data

Genome context

Chr_1: 57517953-57518106 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sma-mir-8406

Mature sma-miR-8406-5p

• Accession: MIMAT0033516
• Description: Schistosoma mansoni sma-miR-8406-5p mature miRNA
• Sequence: 35 - CAAAUGCAUCUAGAUGAAU - 53
• Evidence: experimental ; SOLiD [1]

Mature sma-miR-8406-3p

• Accession: MIMAT0033517
• Description: Schistosoma mansoni sma-miR-8406-3p mature miRNA
• Sequence: 107 - UUUUCUUAAGAUUUAUUUUG - 126
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402