Stem-loop sma-mir-8407

Accession

MI0027200

Description

Schistosoma mansoni sma-mir-8407 precursor miRNA

Sequence

acucugcccucaauuagaaaaaaaggCGUGAAUAUUAAUAUUACGgagugcucaauuuauucggaacugucagccuuaaccuugguauugauaccuacaaaaugaaUGCAUUUGUUUAUAUUCCAaagcugagaauucuauuugacgcu
.....((..((((.(((((.....(((..((((((.(((......((((((...(((((((..(...((((((((........)))..)))))....)..)))))))))))))))).))))))....))).....))))).)))).)).

Structure

acucu  cc    u     aaaaa   --GU      U   AUUACG      uca       cg -aac     --   uua 
     gc  ucaa uagaa     ggC    GAAUAU AAU      gagugc   auuuauu  g    uguca  gcc   a
     ||  |||| |||||     |||    |||||| |||      ||||||   |||||||  |    |||||  |||    
     cg  aguu aucuu     ucg    CUUAUA UUG      UUUACG   Uaaguaa  c    auagu  ugg   c
----u  -c    u     aagag   aaAC      U   ------      ---       aa aucc     ua   uuc 

Annotation confidence Not enough data

Genome context

Chr_1: 58366307-58366455 [-]

Mature sma-miR-8407-5p

• Accession: MIMAT0033518
• Description: Schistosoma mansoni sma-miR-8407-5p mature miRNA
• Sequence: 27 - CGUGAAUAUUAAUAUUACG - 45
• Evidence: experimental ; SOLiD [1]

Mature sma-miR-8407-3p

• Accession: MIMAT0033519
• Description: Schistosoma mansoni sma-miR-8407-3p mature miRNA
• Sequence: 107 - UGCAUUUGUUUAUAUUCCA - 125
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402