Stem-loop sma-mir-8421

Accession

MI0027214

Description

Schistosoma mansoni sma-mir-8421 precursor miRNA

Sequence

aucuucuaugaaaagauagagucguaagCUCCCUGUACGUUAUUCCAguacauuugcuuuuuuuguuaguugcacuuuuGGAUCUAACAGUAUAAGGUuucacuuuuuucuagucaucaguuuuu
.....((((((..(((.(((((.(.(((((...(((((((((.(((((.......(((.........))).......)))))..)))).))))).)))))))))))..)))..)))).)).....

Structure

aucuu  -    aa   -u     c u     CCC     -    -U     uacauuu   uuu 
     cu auga  aga  agagu g aagCU   UGUAC GUUA  UCCAg       gcu   u
     || ||||  |||  ||||| | |||||   ||||| ||||  |||||       |||   u
     ga uacu  ucu  uuuca c uuUGG   AUAUG CAAU  AGGuu       uga   u
uuuuu  c    ga   uu     - -     --A     A    CU     uucacgu   uug 

Annotation confidence Not enough data

Genome context

Chr_2: 5578339-5578463 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sma-mir-8421

Mature sma-miR-8421-5p

• Accession: MIMAT0033546
• Description: Schistosoma mansoni sma-miR-8421-5p mature miRNA
• Sequence: 29 - CUCCCUGUACGUUAUUCCA - 47
• Evidence: experimental ; SOLiD [1]

Mature sma-miR-8421-3p

• Accession: MIMAT0033547
• Description: Schistosoma mansoni sma-miR-8421-3p mature miRNA
• Sequence: 80 - GGAUCUAACAGUAUAAGGU - 98
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402