Stem-loop sma-mir-7a

Accession

MI0027240

Description

Schistosoma mansoni sma-mir-7a precursor miRNA

Literature search

7 open access papers mention sma-mir-7a
(29 sentences)

Sequence

50831 reads, 7834.0 reads per million, 33 experiments

uucuauguuccagagaaacuUGGAAGACUUGUGAUUUAGUUGUUUaauauuaagugauauaaacuuguuaaauauaaugaaCAACAAUCACAAAUCUCCAUGUgaaaucugguuaaacaacuaa
.....(((((((((...((.((((.((.((((((((..((((((((.(((....(((((......)))))...))).)))))))))))))))).)))))).))....)))))...)))).....

Structure

uucua    ---     -gaa  u    A  C        UA        a   uaag     ua 
     uguu   ccaga    ac UGGA GA UUGUGAUU  GUUGUUUa uau    ugaua  a
     ||||   |||||    || |||| || ||||||||  |||||||| |||    |||||   
     acaa   ggucu    UG ACCU CU AACACUAA  CAACaagu aua    auugu  a
aauca    auu     aaag  U    -  A        --        a   -uaa     uc 

Annotation confidence High

Genome context

4: 25183018-25183141 [+]

Mature sma-miR-7a-5p

• Accession: MIMAT0033598
• Description: Schistosoma mansoni sma-miR-7a-5p mature miRNA
• Sequence: 21 - UGGAAGACUUGUGAUUUAGUUGUUU - 45
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature sma-miR-7a-3p

• Accession: MIMAT0033599
• Description: Schistosoma mansoni sma-miR-7a-3p mature miRNA
• Sequence: 82 - CAACAAUCACAAAUCUCCAUGU - 103
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402