Stem-loop sma-mir-96

Accession

MI0027259

Description

Schistosoma mansoni sma-mir-96 precursor miRNA

Literature search

5 open access papers mention sma-mir-96
(17 sentences)

Sequence

1699 reads, 412.0 reads per million, 31 experiments

ccaaCUUGGCACUUUGGAAUUGUCAcaagguaaauugUGACAGUUACCAGGUGCCAAACCgg
((...(((((((((.(((((((((((((......))))))))))).)))))))))))...))

Structure

  aaC         U  -           gg 
cc   UUGGCACUU GG AAUUGUCAcaa  u
||   ||||||||| || |||||||||||   
gg   AACCGUGGA CC UUGACAGUguu  a
  CCA         -  A           aa 

Annotation confidence High

Genome context

Z: 15420151-15420212 [-]

Mature sma-miR-96-5p

• Accession: MIMAT0033635
• Description: Schistosoma mansoni sma-miR-96-5p mature miRNA
• Sequence: 5 - CUUGGCACUUUGGAAUUGUCA - 25
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature sma-miR-96-3p

• Accession: MIMAT0033636
• Description: Schistosoma mansoni sma-miR-96-3p mature miRNA
• Sequence: 38 - UGACAGUUACCAGGUGCCAAACC - 60
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402