Stem-loop sma-mir-1b

Accession

MI0027262

Description

Schistosoma mansoni sma-mir-1b precursor miRNA

Literature search

3 open access papers mention sma-mir-1b
(7 sentences)

Sequence

408850 reads, 64645.0 reads per million, 33 experiments

uuauacuuauuguaauuucuucuagucuuugCAUACUUCCCAAUAGGCCAUagaguaauuuaauacucuacuaguuuuuuauuagaaaaaaagaaugaaaaacuaguacugaguaacuuaUGGAAUGUUGUGAAGUAUGUGCUcgacugggaccagucugcaaaugag
.....((((((((((((..((((((((...(((((((((.(((((..((((.((((.......((((((((((((((((((((..........)))))))))))))))..)))))))))))))..))))).)))))))))....))))))))..))).))).))))))

Structure

uuaua      -   -   uc        -uuu         C     GG    a    aauuuaa     --               agaa 
     cuuauu gua auu  uucuaguc    gCAUACUUC CAAUA  CCAU gagu       uacuc  uacuaguuuuuuauu    a
     |||||| ||| |||  ||||||||    ||||||||| |||||  |||| ||||       |||||  |||||||||||||||     
     gaguaa cgu uga  agggucag    UGUAUGAAG GUUGU  GGUa uuca       augag  augaucaaaaaguaa    a
-----      a   c   cc        cUCG         U     AA    -    -------     uc               gaaa 

Annotation confidence High

Genome context

PAR2: 17242636-17242803 [+]

Mature sma-miR-1b-5p

• Accession: MIMAT0033641
• Description: Schistosoma mansoni sma-miR-1b-5p mature miRNA
• Sequence: 32 - CAUACUUCCCAAUAGGCCAU - 51
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature sma-miR-1b-3p

• Accession: MIMAT0033642
• Description: Schistosoma mansoni sma-miR-1b-3p mature miRNA
• Sequence: 121 - UGGAAUGUUGUGAAGUAUGUGCU - 143
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402