Stem-loop sma-mir-2162

Accession

MI0027274

Description

Schistosoma mansoni sma-mir-2162 precursor miRNA

Literature search

6 open access papers mention sma-mir-2162
(11 sentences)

Sequence

35122 reads, 7861.0 reads per million, 33 experiments

aggaccaugcuaaagaugucguuuggauggaccucucuaggggaugAGUGGGAUGGUUGCAUAUAUacaaugcugacaaugUAUUAUGCAACGUUUCACUCUaccccagggacucuacuucaaccuacauagugcuuucaugaauua
.....((((..((((((((.(.(((((((((..(((((.((((..((((((((((.(((((((.(((((.((....)).))))))))))))))))))))))..))))))))).)))).))))).).))))....)))))))).....

Structure

aggac    cu    ----    c u     -    cc     a    au          G       U     a  c 
     caug  aaag    augu g uugga ugga  ucucu gggg  gAGUGGGAUG UUGCAUA AUaca ug u
     ||||  ||||    |||| | ||||| ||||  ||||| ||||  |||||||||| ||||||| ||||| ||  
     guac  uuuc    uaca c aacuu aucu  aggga cccc  CUCACUUUGC AACGUAU UAUgu ac g
auuaa    --    guga    u c     c    -c     -    aU          -       -     a  a 

Annotation confidence High

Genome context

PAR2: 27549504-27549650 [-]

Mature sma-miR-2162-5p

• Accession: MIMAT0033665
• Description: Schistosoma mansoni sma-miR-2162-5p mature miRNA
• Sequence: 47 - AGUGGGAUGGUUGCAUAUAU - 66
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature sma-miR-2162-3p

• Accession: MIMAT0033666
• Description: Schistosoma mansoni sma-miR-2162-3p mature miRNA
• Sequence: 82 - UAUUAUGCAACGUUUCACUCU - 102
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402