Stem-loop sma-mir-2f

Accession

MI0027287

Description

Schistosoma mansoni sma-mir-2f precursor miRNA

Literature search

4 open access papers mention sma-mir-2f
(10 sentences)

Sequence

1467 reads, 228.0 reads per million, 29 experiments

cgauaccuGGUGUUGAUUCUGGCUGAGAUugaggcaggaaaauaaacaauuguugccugUCACAGCCAAUAUUGAUACCCGgcguug
((((.((.(((((((((..((((((.(((..((((((.((.........)).))))))))).))))))..))))))))).)).))))

Structure

    a  u         UC      A   ug      g  aau 
cgau cc GGUGUUGAU  UGGCUG GAU  aggcag aa   a
|||| || |||||||||  |||||| |||  |||||| ||   a
guug gG CCAUAGUUA  ACCGAC CUg  uccguu uu   a
    c  C         UA      A   --      g  aac 

Annotation confidence High

Genome context

5: 9679863-9679949 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sma-mir-2f

Mature sma-miR-2f-5p

• Accession: MIMAT0053619
• Description: Schistosoma mansoni sma-miR-2f-5p mature miRNA
• Sequence: 9 - GGUGUUGAUUCUGGCUGAGAU - 29
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature sma-miR-2f-3p

• Accession: MIMAT0033691
• Description: Schistosoma mansoni sma-miR-2f-3p mature miRNA
• Sequence: 60 - UCACAGCCAAUAUUGAUACCCG - 81
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402