Stem-loop gra-MIR3267

Accession

MI0027575

Description

Gossypium raimondii gra-MIR3267 precursor miRNA

Sequence

3797 reads, 1129.0 reads per million, 13 experiments

caggugggguuCUGUCGCAGGGGAGAUGGCUGGuccauucaugccuaugcuaugccaauuauguaugcaucagCCAUCUCACCGCGCCAGAACUccaucca
..((((((((((((.(((.((.((((((((((((.(((.((((.....((...))....)))).))).)))))))))))).))))).))))))))))))..

Structure

ca            U   A  G            c   u    ccuau  u 
  ggugggguuCUG CGC GG GAGAUGGCUGGu cau caug     gc  
  |||||||||||| ||| || |||||||||||| ||| ||||     || a
  cuaccUCAAGAC GCG CC CUCUACCgacua gua guau     cg  
ac            C   -  A            c   u    -uaac  u 

Annotation confidence Medium

Genome context

chr6: 6562309-6562409 [-]

Mature gra-miR3267-5p

• Accession: MIMAT0033980
• Description: Gossypium raimondii gra-miR3267-5p mature miRNA
• Sequence: 12 - CUGUCGCAGGGGAGAUGGCUGG - 33
• Evidence: experimental ; Illumina [1]

Mature gra-miR3267-3p

• Accession: MIMAT0055352
• Description: Gossypium raimondii gra-miR3267-3p mature miRNA
• Sequence: 74 - CCAUCUCACCGCGCCAGAACU - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629