Stem-loop gra-MIR167b

Accession

MI0027579

Description

Gossypium raimondii gra-MIR167b precursor miRNA

Literature search

2 open access papers mention gra-MIR167b
(12 sentences)

Sequence

434583 reads, 51197.0 reads per million, 13 experiments

uuugagagguUGAAGCUGCCAGCAUGAUCUGGUaaugggccuagcuaucacccuuuuuuuauuuuuguauucuuaggccucuuuuauaguuuuuguacagguauguuaaguuagauuguuuaugaccgguuuuagaucaaaauucuuuugaguccaagaugaguuuuuuucuuucuuucuuucaggagaaguuuaucaaucauuugguuaagggcuuuuagagucuuagauuaccaggcaacuuagauguguuuauaaagaacccugccuguacuuaagcuucauagguugucgguucauacuaUCAGAUCAUCUUGCAGCUUCAAucacucacu
..((((.((((((((((((.((.((((((((((((((((((..................(((....)))......(((..(((....(((((..(((((((((.(((....(((((.(((((((.(((((....((((....((((((((((...((((.(((.....)))..))))...))))))))))....(((((....)))))..(((((((...))))))).))))))).))))...)))))..))))).....)))..)))))))))..)))))....)))..))))))))))..))))))))))))).)))))))))))).))))..

Structure

uu    a            C  C           --       uagcuaucacccuuuuuuuauuuuuguauucuua   cu   uuau     uu         -u   -aagu     -u     ---  a  -   uuua    ----------------------------------aaaa          ucc    -u   u 
  ugag gguUGAAGCUGC AG AUGAUCUGGUa  augggcc                                  ggc  cuu    aguuu  guacaggua  guu     uagau  guuua   ug cc ggu    gauc                                      uucuuuugag   aaga  gag u
  |||| |||||||||||| || |||||||||||  |||||||                                  |||  |||    |||||  |||||||||  |||     |||||  |||||   || || |||    ||||                                      ||||||||||   ||||  ||| u
  acuc cuAACUUCGACG UC UACUAGACUau  uacuugg                                  cug  gga    ucgaa  cauguccgu  caa     auuug  uagau   ac gg cca    uuag                                      aagaggacuu   uucu  cuu u
uc    a            U  -           ca       ----------------------------------   uu   uacu     uu         cc   gaaau     ug     uca  -  a   ----    auucugagauuuucgggaauugguuuacuaacuauuug          ucu    uu   u 

Annotation confidence High

Genome context

chr9: 11531311-11531645 [+]

Mature gra-miR167b-5p

• Accession: MIMAT0055355
• Description: Gossypium raimondii gra-miR167b-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUGGU - 33
• Evidence: experimental ; unknown

Mature gra-miR167b-3p

• Accession: MIMAT0033984
• Description: Gossypium raimondii gra-miR167b-3p mature miRNA
• Sequence: 305 - UCAGAUCAUCUUGCAGCUUCAA - 326
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629