miRBase entry: gra-MIR8637

Stem-loop gra-MIR8637


Accession
MI0027582
Description
Gossypium raimondii gra-MIR8637 precursor miRNA


Sequence

5255 reads, 1071.0 reads per million, 13 experiments
aguaccauggAGGCCCCUGUAUUGAGAGUCGGAUugcuuauugccccuucuacucaaaaaaugggcaaauuaguuccuguacguaaggucaaagagcaagcuagucuuucuguuaaaaauuacauccaguuuuacaguuaaaaacuggucccuauaugucagcguaaaguauacgugguaugccaaauguaacaguuuaguuauuuugucagccauaucaauuuuuaacaauagaaaugaaagaaauuuuuaacagaaagaaccaauuuucucuuugaucucacuuaaaaggauugauuuagcuauuuuuuaaguaaagagggcaaaaugcAAUCUGACUCUUAGUACAUgggucuccaugauacuu
((((.(((((((((((.((((((((((((((((((((...(((((((((.((((.(((((((((..((((((((.(((.((.((.(((((((((((.(((....(((((((((((((((((....((((((((.......))))))))...((.((((....)))).)).....(((((.((.((((.(((((......))))))))).))))))).(((.((((((....)))))))))....))))))))))))))))).....))).))))))))))).)).))..)))))))))))..))))))))).))))))).))))))...)))))))))))))))))))).))))))))))).)))).

Structure
-    c           C                    uua      -   c    c         gc        u   -g  c  a           c   -cuag                 acauccaguuuuacaguuaaaaacuggucccuauaugucagcguaaaguauac     a  c    u     ag 
 agua cauggAGGCCC UGUAUUGAGAGUCGGAUugc   uugccc cuu uacu aaaaaaugg  aaauuagu ccu  ua gu aggucaaagag aag     ucuuucuguuaaaaauu                                                     guggu ug caaa guaac  u
 |||| ||||||||||| ||||||||||||||||||||   |||||| ||| |||| |||||||||  |||||||| |||  || || ||||||||||| |||     |||||||||||||||||                                                     ||||| || |||| |||||   
 ucau guaccucuggg ACAUGAUUCUCAGUCUAAcg   aacggg gaa auga uuuuuuauc  uuuaguua gga  au ca ucuaguuucuc uuu     agaaagacaauuuuuaa                                                     uaccg ac guuu uauug  u
u    a           U                    uaa      a   -    a         ga        -   aa  u  c           u   aacca                 -------------------------agaaaguaaagauaacaauuuuuaacua     -  u    -     au 


Annotation confidence Low
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Genome context
chr1: 10368597-10368963 [+]

Database links

Mature gra-miR8637-5p

Accession MIMAT0033987
Description Gossypium raimondii gra-miR8637-5p mature miRNA
Sequence 11 - AGGCCCCUGUAUUGAGAGUCGGAU - 34
Evidence experimental
Illumina [1]

Mature gra-miR8637-3p

Accession MIMAT0055358
Description Gossypium raimondii gra-miR8637-3p mature miRNA
Sequence 332 - AAUCUGACUCUUAGUACAU - 350
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629