Stem-loop gra-MIR172a

Accession

MI0027583

Description

Gossypium raimondii gra-MIR172a precursor miRNA

Literature search

2 open access papers mention gra-MIR172a
(9 sentences)

Sequence

guuugcagauGCGGCAUUAUCAAGAUUCACAaacuuaguacaggguuucauuggagagccaaagggugugguuuagugguaccccuccacaaaaucaccuccuuuuacuucaaaguuuuccuuucaaauaugggaaucuugaugaugcugcaucagcaaaca
((((((.(((((((((((((((((((((.((..........((((...(.((((((....((((((.(((((((.((((.......)))).))))))).))))))..)))))).)...))))........)).))))))))))))))))))))).)))))).

Structure

-      a                     A  aacuuaguac    uuu a      agcc      u       a    ua 
 guuugc gauGCGGCAUUAUCAAGAUUC CA          aggg   c uuggag    aaaggg gugguuu gugg  c
 |||||| ||||||||||||||||||||| ||          ||||   | ||||||    |||||| ||||||| ||||  c
 caaacg cuacgucguaguaguucuaag gu          uccu   g aacuuc    uuuccu cacuaaa cacc  c
a      a                     g  --auaaacuu    uuu a      --au      c       a    uc 

Annotation confidence Not enough data

Genome context

chr3: 38291923-38292084 [-]

Mature gra-miR172a

• Accession: MIMAT0033988
• Description: Gossypium raimondii gra-miR172a mature miRNA
• Sequence: 11 - GCGGCAUUAUCAAGAUUCACA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629