Stem-loop gra-MIR8663a

Accession

MI0027596

Description

Gossypium raimondii gra-MIR8663a precursor miRNA

Sequence

ccgugucaggUUUGAACUUGGCAACUUUUUUCACauugagaccuaaacuuuuuuuuauccaaguuagacccuaaacuugguaauuauucccacauuaagcuugaacuuacaauuguucucacauugggguuugaauuugaggguuuucaagggcuaauuuagauaaaaaaagauuucaugucccaaugugagaacauuugucaaguuuagugccuaacuuugacaaca
...(((((((((((((((((((((...(((((((((((.(((..(((.(((((((((((.(((((((.((((((((((...((((...(((.((........((((........))))......)))))....))))...))))))...))))))))))).))))))))))).)))...))).)))))))))))...))))))))))))).)))......)))))...

Structure

ccg     ------   -             CUU           a   -cu   c           c       a    ---      ggu    -auu   a  uuaagcuu    uua 
   uguca      ggU UUGAACUUGGCAA   UUUUCACauug gac   aaa uuuuuuuuauc aaguuag cccu   aaacuu   aauu    ccc ca        gaac   c
   |||||      ||| |||||||||||||   ||||||||||| |||   ||| ||||||||||| ||||||| ||||   ||||||   ||||    ||| ||        ||||    
   acagu      ccg gauuugaacuguu   aagaguguaac cug   uuu gaaaaaaauag uuuaauc ggga   uuuggg   uuaa    ggg gu        cuug   a
aca     uucaau   u             uac           c   uac   a           a       -    acu      agu    guuu   -  --uacacu    uua 

Annotation confidence Not enough data

Genome context

chr1: 7969947-7970174 [+]

Mature gra-miR8663a

• Accession: MIMAT0034001
• Description: Gossypium raimondii gra-miR8663a mature miRNA
• Sequence: 11 - UUUGAACUUGGCAACUUUUUUCAC - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629