Stem-loop gra-MIR8644

Accession

MI0027597

Description

Gossypium raimondii gra-MIR8644 precursor miRNA

Sequence

219 reads, 46.0 reads per million, 12 experiments

agugaagcuuUUAAACUCCAGAAGUAGGGCUagaauguugucauguaucuauuuaauuauuauaggcauuaauuaacuuucuuaaauauauccuaguaagacacauggcaacccucuaaCUUUGCUUGUGGAGUUUAUGAAcuucuau
...((((.((.(((((((((.((((((((.((((..((((((((((.(((............((((...((.((((.....)))).))...))))...))).))))))))))..)))).)))))))).))))))))).)).))))...

Structure

agu    c  U         G        C    au          a   auuuaauuauua    cau  a    c 
   gaag uu UAAACUCCA AAGUAGGG Uaga  guugucaugu ucu            uagg   ua uuaa u
   |||| || ||||||||| |||||||| ||||  |||||||||| |||            ||||   || |||| u
   cuuc AG AUUUGAGGU UUCGUUUC aucu  caacgguaca aga            aucc   au aauu u
uau    A  U         G        a    cc          c   ---------aug    uau  a    c 

Annotation confidence Medium

Genome context

chr13: 35193216-35193363 [+]

Mature gra-miR8644-5p

• Accession: MIMAT0034002
• Description: Gossypium raimondii gra-miR8644-5p mature miRNA
• Sequence: 11 - UUAAACUCCAGAAGUAGGGCU - 31
• Evidence: experimental ; Illumina [1]

Mature gra-miR8644-3p

• Accession: MIMAT0055364
• Description: Gossypium raimondii gra-miR8644-3p mature miRNA
• Sequence: 120 - CUUUGCUUGUGGAGUUUAUGAA - 141
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629