Stem-loop gra-MIR8645

Accession

MI0027598

Description

Gossypium raimondii gra-MIR8645 precursor miRNA

Sequence

aagguucacaUUGGUACCUGAACUUGACGUCUcgguucaaauuggcuuuuaaguccaaauuaguacuagaguuagaugagguauuugaaccaauuuuaacuaugaagucaaguuugguacuaauuugaaccaa
..((((((.(((((((((.(((((((((.((..((((.(((((((..(((((((((..(((...((....))..)))..)).)))))))))))))).))))..)).)))))))))))))))))).))))))..

Structure

aa      c         U         G  Uc    c       cu       -  aa   agu  u 
  gguuca aUUGGUACC GAACUUGAC UC  gguu aaauugg  uuuaagu cc  auu   ac a
  |||||| ||||||||| ||||||||| ||  |||| |||||||  ||||||| ||  |||   ||  
  ccaagu uaaucaugg uuugaacug ag  ucaa uuuaacc  aaguuua gg  uag   ug g
aa      u         -         a  ua    u       --       u  ag   -au  a 

Annotation confidence Not enough data

Genome context

chr5: 3507099-3507231 [+]

Mature gra-miR8645

• Accession: MIMAT0034003
• Description: Gossypium raimondii gra-miR8645 mature miRNA
• Sequence: 11 - UUGGUACCUGAACUUGACGUCU - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629