Stem-loop gra-MIR8647

Accession

MI0027600

Description

Gossypium raimondii gra-MIR8647 precursor miRNA

Sequence

augagcauguuagaucaaaaaguaaauugauccuuuuguucaaaauuuuaucaauuccuauuuguuaaaaacugauccaugcauguaagcauaagguacacguggcuugauuauuaugucaaccauacccauuuuuaaccgugaaaaugaauuaauuuuuaauagaaaugACCGAUUUGCUCUUUGAUCUAauguauauaa
......(((((((((((((.(((((((((.((.(((((((.(((((((((.(((.......))).)))).........((((......))))..(((....((((.(((((......))))))))))))((((((((....)))))))).....))))).)))))))..)).))))))))).)))))))))))))......

Structure

augagc             a         a  -c       c     uuuaucaauuccuauuuguuaaaaacugauccaugcauguaagcauaa   acac    c     ua 
      auguuagaucaaa aguaaauug uc  uuuuguu aaaau                                                ggu    gugg uugau  u
      ||||||||||||| ||||||||| ||  ||||||| |||||                                                |||    |||| |||||   
      uguaAUCUAGUUU UCGUUUAGC Ag  aagauaa uuuua                                                cca    uacc aacug  u
aauaua             C         C  ua       u     -----------------------auuaaguaaaagugccaauuuuuac   ----    -     ua 

Annotation confidence Not enough data

Genome context

chr3: 18899142-18899342 [+]

Mature gra-miR8647

• Accession: MIMAT0034005
• Description: Gossypium raimondii gra-miR8647 mature miRNA
• Sequence: 171 - ACCGAUUUGCUCUUUGAUCUA - 191
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629