Stem-loop gra-MIR8648

Accession

MI0027601

Description

Gossypium raimondii gra-MIR8648 precursor miRNA

Sequence

auuaugguuucaguccuuauacuaugcugaaauuugagauuuaacccuuucaaugacguaauuuggccccucuacuauuauaauguuauuaauagguccaaaaugauagcauuguuaauaguagugacguggauuuuuaccauaagaaaguuaucugaccuaucuuuaccauaagaaauuuauuaacaacaaaauccucaucaucauuuuaauggcaacuuuuaacaauguuauaacauuauaacaguggaggguccaaauuaugucaaauuaaaaggauuaaaucucaaaUUUCAGCGCAGUAGAAGGAUUaaaaccauga
.(((((((((.(((((((.((((.((((((((((((((((((((.(((((.(((((((((((((((.(((((((((.(((((((((((..................((((((((((((.(((.((((.(.(((((((.....(((..(((((.(((.................)))))))).))).....))))))).).))))(((....)))...))).))))))))))))))))))))))).))))))))).)))))))))))))..)).))))).)))))))))))))))))))).)))).))))))).)))))))))

Structure

a         c       a    a                    c     c  --             c         a           uuaauagguccaaaauga            u   ------------a    c u       uacca   ga     a   gaccuau 
 uuaugguuu aguccuu uacu ugcugaaauuugagauuuaa ccuuu aa  ugacguaauuugg cccucuacu uuauaauguua                  uagcauuguuaa agu             guga g ggauuuu     uaa  aaguu ucu       c
 ||||||||| ||||||| |||| |||||||||||||||||||| ||||| ||  ||||||||||||| ||||||||| |||||||||||                  |||||||||||| |||             |||| | |||||||     |||  ||||| |||       u
 aguaccaaa UUAGGAA AUGA GCGACUUUaaacucuaaauu ggaaa uu  acuguauuaaacc gggagguga aauauuacaau                  auuguaacaauu uca             uacu c ccuaaaa     auu  uuuaa aga       u
-         a       G    C                    a     a  aa             u         c           ------------------            u   acgguaauuuuac    a u       caaca   -a     -   auaccau 

Annotation confidence Not enough data

Genome context

chr10: 709534-709855 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8648

Mature gra-miR8648

• Accession: MIMAT0034006
• Description: Gossypium raimondii gra-miR8648 mature miRNA
• Sequence: 292 - UUUCAGCGCAGUAGAAGGAUU - 312
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629