Stem-loop gra-MIR5741

Accession

MI0027604

Description

Gossypium raimondii gra-MIR5741 precursor miRNA

Sequence

uauuacaugaaucaauuuaguccuuuuacuauuaaaaguaaucaaacaaggcaaauuggaauauagaacauuccaaauuuuuucuacaguacaguuuggauuuauuugauuccuuuuaaUAGUAUAAGGACUAAAUUGGUcuaucucuau
......(((.(((((((((((((((.((((((((((((.(((((((.(((.(((((((.....(((((.............))))).....)))))))..))).))))))).)))))))))))).))))))))))))))).)))......

Structure

uauuac   a               u            u       c   -g       gaaua     cauuc 
      aug aucaauuuaguccuu uacuauuaaaag aaucaaa aag  caaauug     uagaa     c
      ||| ||||||||||||||| |||||||||||| ||||||| |||  |||||||     |||||     a
      uau UGGUUAAAUCAGGAA AUGAUaauuuuc uuaguuu uuu  guuugac     aucuu     a
uaucuc   c               U            c       a   ag       augac     uuuua 

Annotation confidence Not enough data

Genome context

chr6: 2568464-2568613 [+]

Mature gra-miR5741

• Accession: MIMAT0034009
• Description: Gossypium raimondii gra-miR5741 mature miRNA
• Sequence: 120 - UAGUAUAAGGACUAAAUUGGU - 140
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629