miRBase entry: gra-MIR8709a

Stem-loop gra-MIR8709a


Accession
MI0027610
Description
Gossypium raimondii gra-MIR8709a precursor miRNA


Sequence

2672 reads, 535.0 reads per million, 13 experiments
uuaagaauaaauauuaaAACUAUACAUGAACUUUGAUccacugugcaaucucauacauuaacuuuaaauuugugugauuuuauauaugaaauuuuguuuugauucaauuuucauaaaucauaaaucauaaacagcauugucaaauuagcaucauuuuacaugcauguauugcauacacaaacaauuauauuauucaauauaaaaacaaauguauguauuuuuuucuuuaaauauguacaauagaaugcaaaucaaaguuuuauguauacauauaauucucaauuuaaauuucacguguauaauugcaccAAAUCAAAGUUCAUGUAUcaaauuacacauuagaccaaaguuuauguauaaauuugauauuuaucccaau
......((((((((((((..(((((((((((((((.((...((((.(((...((((((.((((((..((((((((((((.(((((.((((((((((((((((((..((((....))))....))))).)))))((((.((.((((.......)))).))))))......((((((((.......(((((((....))))))).......)))))))).............(((((((..(((((((..........)))))))...)))))))............)))))))).))))).))))))).))))).)))))).))))))...))).))))...)).)))))))))))))))..))))))))))))......

Structure
uuaaga            AC               A  cac    c   cuc      u      aa     -       u     a        uguuuugauucaauuuucauaaaucauaaaucauaaacagcauugucaaauuagcaucauuuuacaugcauguau        caaacaa       a 
      auaaauauuaaA  UAUACAUGAACUUUG Uc   ugug aau   auacau aacuuu  auuug ugugauu uauau ugaaauuu                                                                           ugcauaca       uuauauu u
      ||||||||||||  ||||||||||||||| ||   |||| |||   |||||| ||||||  ||||| ||||||| ||||| ||||||||                                                                           ||||||||       |||||||  
      uauuuauaguuu  auauguauuugaaac ag   acac uua   UAUGUA UUGAAA  UAAAc acguuaa augug acuuuaaa                                                                           auguaugu       aauauaa u
uaaccc            aa               c  auu    a   aac      C      -C     c       u     c        -------uuuaacucuuaauauacauauguauuuugaaacuaaacguaagauaacauguauaaauuucuuuuuuu        aaacaaa       c 


Annotation confidence Low
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Genome context
chr7: 25000323-25000701 [+]

Database links

Mature gra-miR8709a-5p

Accession MIMAT0034015
Description Gossypium raimondii gra-miR8709a-5p mature miRNA
Sequence 18 - AACUAUACAUGAACUUUGAU - 37
Evidence experimental
Illumina [1]

Mature gra-miR8709a-3p

Accession MIMAT0055371
Description Gossypium raimondii gra-miR8709a-3p mature miRNA
Sequence 310 - AAAUCAAAGUUCAUGUAU - 327
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629