Stem-loop gra-MIR7492d

Accession

MI0027611

Description

Gossypium raimondii gra-MIR7492d precursor miRNA

Sequence

2074 reads, 339.0 reads per million, 13 experiments

uuuucaaaaacgucgcUAAAGCCCUGAGCAUUAGCggcgcuuuuucaaaaacgccacuaaagccccgaaaggucagaaaacgacgccauUGGGCUUAGAUUUUUUGCGGCGUUuuuacgaaaa
.(((((((((((((((.((((..((((((.((((.((((.((((...)))))))).))))....((((..((((.......))).)..))))))))))..)))).)))))))))))..)))).

Structure

u    --           U    CC      -------------------------------A    C    c    u 
 uuuc  aaaaacgucgc AAAG  CUGAGC                                UUAG ggcg uuuu  
 ||||  ||||||||||| ||||  ||||||                                |||| |||| |||| c
 aaag  uuuUUGCGGCG UUUU  GAUUCG                                aauc ccgc aaaa  
a    ca           U    UA      GGUuaccgcagcaaaagacuggaaagccccga    a    -    a 

Annotation confidence Low

Genome context

chr12: 13510877-13510999 [-]

Mature gra-miR7492d-5p

• Accession: MIMAT0055372
• Description: Gossypium raimondii gra-miR7492d-5p mature miRNA
• Sequence: 17 - UAAAGCCCUGAGCAUUAGC - 35
• Evidence: experimental ; unknown

Mature gra-miR7492d-3p

• Accession: MIMAT0034016
• Description: Gossypium raimondii gra-miR7492d-3p mature miRNA
• Sequence: 90 - UGGGCUUAGAUUUUUUGCGGCGUU - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629