Stem-loop gra-MIR8655

Accession

MI0027615

Description

Gossypium raimondii gra-MIR8655 precursor miRNA

Sequence

ugucaucacaaauaugaucugaacauauuaaaaacacguugaucaaauuguaaauauauuuauacuuaugguguagaaagugcacauuuaucuuuaacauguaccuuguggagguuucuauuauuaaacaaccaugggguuguuuuuuucccaccagccaagacgaaggguuuaauaguuuuuagguuaugaaaucugacaauuugauccuaaauuaaauugaaguagaauugaaauauuuggggaaaaagucaaaccagucauacaaugaauaauuuaagaguguuuuuuuuaugugaaauuguuaauuuuuuaaagguuuuuauuauuuuauuauuaaauuuauuAUAUGUUCUGAUUAUAUCUGUucuuuuugau
.......(((.((((((((.((((((((.((((((((.((((....((((((......((((((((...))))))))......(((((((....))).))))(((((((((..((((........))))..)))))))))(((((((((((((..((((.........)))).........(((((((....)))))))(((((((((.....)))))))))..................))))))))))).)).........)))))).......))))..)))))))).......((((((.((((....)))).))))))........................)))))))).)))))))).)))..........

Structure

---ugucauc   a        u        --------------------------------------------------------u        -g    ---ucaa      -------------------------------------------------------------------------aauauauuuauacuuaugguguagaaagugcacauuuaucuuuaacaugu         ag    cua 
          aca auaugauc gaacauau                                                         aaaaacac  uuga       auugua                                                                                                                           accuugugg  guuu   u
          ||| |||||||| ||||||||                                                         ||||||||  ||||       ||||||                                                                                                                           |||||||||  ||||    
          UGU UAUAUUAG CUUGUAUA                                                         uuuuugug  aauu       uaacau                                                                                                                           ugggguacc  caaa   u
uaguuuuucu   C        U        uuauuuaaauuauuauuuuauuauuuuuggaaauuuuuuaauuguuaaaguguauuu        ag    uaauaag      acugaccaaacugaaaaagggguuuauaaaguuaagaugaaguuaaauuaaauccuaguuuaacagucuaaaguauuggauuuuugauaauuugggaagcagaaccgaccacccuuuuuuugu         aa    uua 

Annotation confidence Not enough data

Genome context

chr4: 4325745-4326122 [+]

Mature gra-miR8655

• Accession: MIMAT0034020
• Description: Gossypium raimondii gra-miR8655 mature miRNA
• Sequence: 348 - AUAUGUUCUGAUUAUAUCUGU - 368
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629