Stem-loop gra-MIR8660

Accession

MI0027625

Description

Gossypium raimondii gra-MIR8660 precursor miRNA

Sequence

aaaaucaauuuagccauucauuuaaacuuucuucuauuuuagcuauuaaacuuguauuauuugucaaaucaccuaaaaauagaugaaaaaguuaacauuguugaugugacauacaugugaauugcuacguggaugccaugucaacaauuaauuaguuuuuaaauuuuaaaaaaauucaaaauaauauauaaaaauuauuuuaaaaauuauaaaauguauuuuuaaauuuuaaaaauaauuaguuaauugcaaacgugguguauacugcgucaacaaaguuaacaaacauuaacuucuagcuauuuugggugauuugacaagcaaugcaaguuuaugagcuaaaagagACGAAAAAUUAAAUGGAGGGCUAaaauauauuu
........(((((((.(((((((((..((((.(((.((((((((..((((((((((((.(((((((((((((((((((.(((..(((...((((((.((((((((((......((((((......)))))).(((((((((...(((((((((((((((((((.((((((((.((.....(((((...(((((....)))))...))))).....)).)))))))).)))))))))...))))))))))...))))))))).....)))))))))).))))))..........)))...)))))))))))))))))))))).))))))))))))..)))))))).))).))))..))))))))).)))))))........

Structure

aaaaucaa       a         ac    u   a        au            a                   a   -au   -------aaa      a          gacauacaugugaauugcuacgugg         caa          ---         u        a  ucaaa     aua     a 
        uuuagcc uucauuuaa  uuuc ucu uuuuagcu  uaaacuuguauu uuugucaaaucaccuaaaa uag   gaa          guuaac uuguugaugu                         augccaugu   caauuaauua   guuuuuaaa uuuaaaaa au     auaau   uaaaa u
        ||||||| |||||||||  |||| ||| ||||||||  |||||||||||| ||||||||||||||||||| |||   |||          |||||| ||||||||||                         |||||||||   ||||||||||   ||||||||| |||||||| ||     |||||   |||||  
        aaAUCGG AGGUAAAUU  AAAG Aga aaaaucga  auuugaacguaa gaacaguuuaguggguuuu auc   cuu          caauug aacaacugcg                         uguggugca   guuaauugau   uaaaaauuu aaauuuuu ug     uauua   auuuu u
uuuauaua       G         AA    C   g        gu            c                   -   gau   caauuacaaa      a          --------------------ucaua         aac          uaa         u        a  uaaaa     aaa     a 

Annotation confidence Not enough data

Genome context

chr4: 34280607-34280986 [-]

Mature gra-miR8660

• Accession: MIMAT0034030
• Description: Gossypium raimondii gra-miR8660 mature miRNA
• Sequence: 348 - ACGAAAAAUUAAAUGGAGGGCUA - 370
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629