miRBase entry: gra-MIR7486d

Stem-loop gra-MIR7486d


Accession
MI0027630
Description
Gossypium raimondii gra-MIR7486d precursor miRNA


Sequence

314 reads, 38.0 reads per million, 13 experiments
aacgcgucccUGGGGGCGCGCUUUGCUUACGucgacacaaagcgcgcuuacgaggacgcgcuuuucUGCCACGUAGGCAAAGCGCgccccuagggacgcauu
...(((((((((((((((((((((((((((((.(.((.(((((((((((...))).))))))))..))).)))))))))))))))))))))))))))))...

Structure
aac                             c a  -c        -   a 
   gcgucccUGGGGGCGCGCUUUGCUUACGu g ca  aaagcgcg cuu  
   ||||||||||||||||||||||||||||| | ||  |||||||| ||| c
   cgcagggauccccgCGCGAAACGGAUGCA C GU  uuucgcgc gga  
uua                             C -  cu        a   g 


Annotation confidence Low
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Genome context
chr5: 7167352-7167453 [-]

Database links

Mature gra-miR7486d-5p

Accession MIMAT0034035
Description Gossypium raimondii gra-miR7486d-5p mature miRNA
Sequence 11 - UGGGGGCGCGCUUUGCUUACG - 31
Evidence experimental
Illumina [1]

Mature gra-miR7486d-3p

Accession MIMAT0055383
Description Gossypium raimondii gra-miR7486d-3p mature miRNA
Sequence 67 - UGCCACGUAGGCAAAGCGC - 85
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629