Stem-loop gra-MIR8669

Accession

MI0027635

Description

Gossypium raimondii gra-MIR8669 precursor miRNA

Sequence

cucggauuauauugagguuuuguuuccgccuuuauugagagccaacaugcugugagcaauuugauucacagagagagaacaccuugaagaauugggcuauacuuggacgccaaugggcgagacacucauguccccuuaguaaguggccuuguguccacguauggcucgauuccucaaggugcucuccuuauauuagugaaacugcucauggcacauugacucucgauAAAGACGAAAGACAAAAUCUCAAUacaacccgaa
.((((.((.((((((((((((((((.((.((((((((((((.(((..(((((((((((.(((.(((....(((.((((.((((((((.((((((((((((((.(((((((....((((.(((((....))))...........).)))).))))))).)))))))))))))).)))))))).))))))).....))).))).)))))))))))..))).)))))))))))).))..)))))))))))))))).)).)))).

Structure

c    a  a                -c  c            c   ca           a   g   -caca   a    a        a              u       caau    g -----------    c 
 ucgg uu uauugagguuuuguuu  cg cuuuauugagag caa  ugcugugagca uuu auu     gag gaga caccuuga gaauugggcuauac uggacgc    gggc a           gaca u
 |||| || ||||||||||||||||  || |||||||||||| |||  ||||||||||| ||| |||     ||| |||| |||||||| |||||||||||||| |||||||    |||| |           ||||  
 agcc aa aUAACUCUAAAACAGA  GC GAAAuagcucuc guu  acgguacucgu aaa uga     uuc cucu guggaacu cuuagcucgguaug accugug    uccg u           cugu c
a    c  c                AA  A            a   ac           c   g   uuaua   -    c        c              c       ---u    g gaaugauuccc    a 

Annotation confidence Not enough data

Genome context

chr12: 7740459-7740719 [-]

Mature gra-miR8669

• Accession: MIMAT0034040
• Description: Gossypium raimondii gra-miR8669 mature miRNA
• Sequence: 228 - AAAGACGAAAGACAAAAUCUCAAU - 251
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629