miRBase entry: gra-MIR7503b

Stem-loop gra-MIR7503b


Accession
MI0027636
Description
Gossypium raimondii gra-MIR7503b precursor miRNA


Sequence

1557 reads, 316.0 reads per million, 13 experiments
uuaauaaccgAACCGAUGGUUGAACAUGUUAGACcacuaguucucgauucaaccaguucgaucgauucgacugugggaccaaguaaaauugguuuuuuauuuuuuauuuuuuuagauuuuugugaacuUUUAAUUAUUGUUGGUUUGACaaucgaaucgaccgaacugguggucuaaccuguuuaaccauagguucgauuauuaaa
(((((((.((((((.(((((((((((.((((((((((((((((((((..........))))(((((((((.(((.(((((((....((((((...(((((.....((((....))))....)))))...))))))....))))))).))).)))))))))..)))))))))))))))).))))))))))).)))))).))))))).

Structure
-       c      G           U                ucgauucaaccaguucga         c   g       guaa      uuu     uuuuu    u 
 uuaauaa cgAACC AUGGUUGAACA GUUAGACcacuaguuc                  ucgauucga ugu ggaccaa    aauugg   uuuau     auuu u
 ||||||| |||||| ||||||||||| ||||||||||||||||                  ||||||||| ||| |||||||    ||||||   |||||     ||||  
 aauuauu gcuugg uaccaauuugu caaucugguggucaag                  agcuaagcu aCA UUUGGUU    UUAAUU   aagug     uaga u
a       a      a           c                ----------------cc         a   G       GUUA      Uuc     -uuuu    u 


Annotation confidence Low
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Genome context
chr4: 47305059-47305264 [-]

Database links

Mature gra-miR7503b-5p

Accession MIMAT0034041
Description Gossypium raimondii gra-miR7503b-5p mature miRNA
Sequence 11 - AACCGAUGGUUGAACAUGUUAGAC - 34
Evidence experimental
Illumina [1]

Mature gra-miR7503b-3p

Accession MIMAT0055388
Description Gossypium raimondii gra-miR7503b-3p mature miRNA
Sequence 129 - UUUAAUUAUUGUUGGUUUGAC - 149
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629