Stem-loop gra-MIR8671

Accession

MI0027638

Description

Gossypium raimondii gra-MIR8671 precursor miRNA

Sequence

ugcuuucuucAACUGUUCGUGAUAAGAUGUCGGUgguucaaucuuuauaucccauggugcuaauguaucuucuagaggccauauaucugcuggaauaauucuauuuaccuggccuccagaagauacauuagcaccaugggauauaaagauugaaccaccgacaccuuaucaaaaauaguugaagaaagcau
(((((((((((((((((..(((((((.((((((((((((((((((((((((((((((((((((((((((((((.(((((((..((.....(((((...)))))..))..))))))).)))))))))))))))))))))))))))))))))))))))))))))).)))))))..))))))))))))))))).

Structure

-                 CG       A                                              a       ua  ucugc     u 
 ugcuuucuucAACUGUU  UGAUAAG UGUCGGUgguucaaucuuuauaucccauggugcuaauguaucuucu gaggcca  ua     uggaa  
 |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||     ||||| a
 acgaaagaaguugauaa  acuauuc acagccaccaaguuagaaauauaggguaccacgauuacauagaaga cuccggu  au     aucuu  
u                 aa       c                                              c       cc  ---uu     a 

Annotation confidence Not enough data

Genome context

chr11: 54253078-54253268 [+]

Mature gra-miR8671

• Accession: MIMAT0034043
• Description: Gossypium raimondii gra-miR8671 mature miRNA
• Sequence: 11 - AACUGUUCGUGAUAAGAUGUCGGU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629