Stem-loop gra-MIR8672

Accession

MI0027639

Description

Gossypium raimondii gra-MIR8672 precursor miRNA

Sequence

uagguaaagaAAGAGAAAUGAUUGUAUGAAACAGauauauuauuauuuuuuaauaauuuuaugucacaucaauaauuuaauccugaauuucaggauuuuaauuuggauuuaaauuuuuuuaagauaaaaauguugauguagcauaaagcuauuagaaaaagagauauagaugacgugacgucacuguuucauauaaucuuuuuuuucagagaaau
........(((((((((..(((((((((((((((.((((((.((.((((((((((.((((((((.(((((((((....((((((((...))))))))....((((..((((((....)))))).))))..))))))))).)))))))).)))))))))).))))))))..(((((...)))))))))))))))))))))))))))))........

Structure

uagguaaa         AU               --------------a      a  a          a        c         auuuaauccugaauuucaggauuuuaa    ga      u 
        gaAAGAGAA  GAUUGUAUGAAACAG               uauauu uu uuuuuuaaua uuuuaugu acaucaaua                           uuug  uuuaaa u
        |||||||||  |||||||||||||||               |||||| || |||||||||| |||||||| |||||||||                           ||||  ||||||  
        cuuuuuuuu  cuaauauacuuuguc               auauag ag aaaagauuau gaaauacg uguaguugu                           aaau  gaauuu u
uaaagaga         --               acugcagugcaguag      -  a          c        a         -------------------------aa    -a      u 

Annotation confidence Not enough data

Genome context

chr11: 62009473-62009687 [+]

Mature gra-miR8672

• Accession: MIMAT0034044
• Description: Gossypium raimondii gra-miR8672 mature miRNA
• Sequence: 11 - AAGAGAAAUGAUUGUAUGAAACAG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629