Stem-loop gra-MIR8678

Accession

MI0027644

Description

Gossypium raimondii gra-MIR8678 precursor miRNA

Sequence

aacuuggauguccuacauggcaauccaaauuaaaauuauuuaauuaaaaacuauuuucaucccaacaacuggauauugaaauuggcaguuaaaaccAAUUUGGACUGUCACGUAGGAcuaccguuag
.....((..(((((((.(((((.((((((((.......(((((((.....(((.(((((..(((.....)))....))))).))).)))))))...)))))))).))))).)))))))..)).....

Structure

aacuu  au       a     a        aaaauua       aaaaa   u     --uc   a 
     gg  guccuac uggca uccaaauu       uuuaauu     cua uuuca    cca c
     ||  ||||||| ||||| ||||||||       |||||||     ||| |||||    ||| a
     cc  cAGGAUG ACUGU AGGUUUAA       aaauuga     ggu aaagu    ggu a
gauug  au       C     C        ----cca       ----c   u     uaua   c 

Annotation confidence Not enough data

Genome context

chr1: 52608276-52608402 [-]

Mature gra-miR8678

• Accession: MIMAT0034049
• Description: Gossypium raimondii gra-miR8678 mature miRNA
• Sequence: 97 - AAUUUGGACUGUCACGUAGGA - 117
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629